| RNAstructure Classes Version 6.2

Here is a list of all file members with links to the files they belong to:

### - a -

- add_branch() : ProbScan.cpp , ProbScan.h

### - b -

- BAD_RSAMPLE_FILE_MSG : RsampleData.cpp
- basestack() : ProbScan.cpp , ProbScan.h
- basestack_t : ProbScan.h

### - c -

- COMPOUNDMESSAGELENGTH : TwoRNA.h

### - e -

- epsilon : RNA.cpp
- equal_within_tolerance() : thermodynamics.cpp
- ERR_BAD_FILE_PE : RsampleData.cpp
- ERR_BAD_FILE_PM : RsampleData.cpp
- ERR_BAD_FILE_UU : RsampleData.cpp
- errmsg() : RNA.cpp
- EXTERIORCLOSENESS : design.cpp

### - f -

- FILE_CT : RNA.h
- FILE_DBN : RNA.h
- file_exists() : Multilign_object.cpp
- FILE_MSA : RNA.h
- FILE_PFS : RNA.h
- FILE_SAV : RNA.h
- FILE_SEQ : RNA.h

### - h -

- hairpin() : ProbScan.cpp , ProbScan.h
- hairpin_t : ProbScan.h

### - i -

- internal_loop() : ProbScan.cpp , ProbScan.h
- internal_loop_t : ProbScan.h

### - m -

- main() : Dynalign_class.cpp , DynalignSMP_class.cpp , HybridRNA_class.cpp , OligoWalk_class.cpp , RNA_class.cpp
- max_internal_loop : ProbScan.cpp
- MINIMUMLENGTH : design.cpp
- multibranch_loop() : ProbScan.cpp , ProbScan.h
- multibranch_loop_t : ProbScan.h
- MULTICLOSENESS : design.cpp

### - p -

- pow() : design.h
- prev_val() : ProbScan.cpp

### - r -

- RNAInputType : RNA.h

### - s -

- SEQUENCE_STRING : RNA.h
- show_bulge_loops() : ProbScan.cpp , ProbScan.h
- show_hairpins() : ProbScan.cpp , ProbScan.h
- show_internal_loops() : ProbScan.cpp , ProbScan.h
- show_mb_element_array() : ProbScan.cpp , ProbScan.h
- show_mbl() : ProbScan.cpp , ProbScan.h
- show_stacks() : ProbScan.cpp , ProbScan.h

### - t -

- TOLERANCE : thermodynamics.h