| ## RNAstructure GUI Help Overview: Version 6.6 | ### Contents ### Index
### General Help Introduction Index What's New Secondary Structure Prediction Algorithm Overview of Main Menus ### Nucleic Acid Analysis Tools Sequence Editor Available Modules for Prediction and Calculation Break RNA Pseudoknots Dot Plot Draw Dynalign Efn2 (Energy Function 2) Fold Generate All Suboptimal Structures MaxExpect: Predict Maximum Expected Accuracy Structure Multilign OligoScreen OligoWalk Partition Function ProbKnot: Predict Secondary Structure Including Pseudoknots Refolding Stochastic Sampling TurboFold Tips and Techniques for Using Modules ### Structure Editing and Drawing StructureEditor ### Appendices Appendix A: File Formats Appendix B: Thermodynamic Parameters Used by RNAstructure ### Please Contact Us to submit Bug Reports or request help. ### References