var class_r_n_a =
[
    [ "RNA", "class_r_n_a.html#a43195bcf410f9c53a0fb146fe490b6ea", null ],
    [ "RNA", "class_r_n_a.html#a92d94cbac25f6e96074c209ba9fa491b", null ],
    [ "RNA", "class_r_n_a.html#a9e572b36b07e0b2fee3165930a430472", null ],
    [ "RNA", "class_r_n_a.html#a800274d25e5fe015b5672c6e7ed8214e", null ],
    [ "RNA", "class_r_n_a.html#aa1ab0c1a0065091f8fdf41c2cdfb43ea", null ],
    [ "~RNA", "class_r_n_a.html#adf930d0e1dd46d4d7dedf006228e2bbf", null ],
    [ "AddComment", "class_r_n_a.html#a1eebbd7916abda62860c611e04bd977d", null ],
    [ "BreakPseudoknot", "class_r_n_a.html#ae052a7062e9eb11c74027eba2f41d5d7", null ],
    [ "CalculateFreeEnergy", "class_r_n_a.html#a815bd1662622d7588a80107777e713be", null ],
    [ "CheckPair", "class_r_n_a.html#a921a4b54459d41b36ced4a70f959753a", null ],
    [ "ContainsPseudoknot", "class_r_n_a.html#abee55f46e52b836f32c9a572af8e2d7c", null ],
    [ "CopyThermo", "class_r_n_a.html#a155d2c6ae7d094206ec0699228f67c46", null ],
    [ "DetermineDrawingCoordinates", "class_r_n_a.html#ae464f8408d0db524408ab27cd6ed5f6e", null ],
    [ "EnsureStructureCapcacity", "class_r_n_a.html#afdca3d7732fbffe48dfc7d52f193798b", null ],
    [ "ExteriorLoopCorrection", "class_r_n_a.html#aa61adf54c3d44cc6e29f6ae523342491", null ],
    [ "FileReader", "class_r_n_a.html#a119769e10ee6b1846209a247643ae9f7", null ],
    [ "FoldSingleStrand", "class_r_n_a.html#aaa9563532ecfeee0de773396b8fc9e17", null ],
    [ "ForceDoubleStranded", "class_r_n_a.html#a8ba352350bcda5514d772db7e763229e", null ],
    [ "ForceFMNCleavage", "class_r_n_a.html#ae2ecc054cf728366d884ecf8f066ee20", null ],
    [ "ForceMaximumPairingDistance", "class_r_n_a.html#a99f37cbc69b7ee0e99116c6fe074e7a7", null ],
    [ "ForceModification", "class_r_n_a.html#ac6f531c36afbcbb44dfad283a31c5879", null ],
    [ "ForcePair", "class_r_n_a.html#a6d33a787f66bbef7e78cf64624c0e12e", null ],
    [ "ForceProhibitPair", "class_r_n_a.html#a4fa207c587f788981d860f70616055e4", null ],
    [ "ForceSingleStranded", "class_r_n_a.html#aef005a05b220b79044a620d202aa8d1b", null ],
    [ "GenerateAllSuboptimalStructures", "class_r_n_a.html#ae9c16cf6e875e5152eca3f4b94721fe3", null ],
    [ "GetBackboneType", "class_r_n_a.html#a571a75afbe286a928b1910b19603273d", null ],
    [ "GetCommentString", "class_r_n_a.html#ab329d510a2ce6765348142c8a6f7dcaa", null ],
    [ "GetEnsembleDefect", "class_r_n_a.html#a08789d87f4a205b16f643696206c5eb4", null ],
    [ "GetEnsembleEnergy", "class_r_n_a.html#a88e712e84b77792e813d22b7a51779f1", null ],
    [ "GetErrorCode", "class_r_n_a.html#a08a3be93861700dce517caf7ccf77358", null ],
    [ "GetErrorDetails", "class_r_n_a.html#a29ba3acd2c1e8ed61e8e0c367cc6051c", null ],
    [ "GetErrorMessage", "class_r_n_a.html#a939a33d1f65d21c257bbb2a0a2505953", null ],
    [ "GetErrorMessageString", "class_r_n_a.html#a3e1f322c241c729f36b56cb0e452c0c4", null ],
    [ "GetForcedDoubleStranded", "class_r_n_a.html#a7e1d3fc6f19b4f5c8fe5373763996029", null ],
    [ "GetForcedFMNCleavage", "class_r_n_a.html#a85711931f3d25f6c2f209ec64beba01c", null ],
    [ "GetForcedModification", "class_r_n_a.html#a9c1eb7ad1992c12d69979418a14ba883", null ],
    [ "GetForcedPair", "class_r_n_a.html#a1d459e60cbbd1d9648a3b61189c76c8d", null ],
    [ "GetForcedProhibitedPair", "class_r_n_a.html#ad993910aa7abba8e80cf3cbb590bddab", null ],
    [ "GetForcedSingleStranded", "class_r_n_a.html#abe8372147747e249430353f7366c4310", null ],
    [ "GetFreeEnergy", "class_r_n_a.html#a4534199d60cfffe08f0a89cd77f3acd9", null ],
    [ "GetFullErrorMessage", "class_r_n_a.html#ab5201096c45cc26ec3a47c7cd98473a4", null ],
    [ "GetLabelXCoordinate", "class_r_n_a.html#a23c879c487fcb254ebf645096026802e", null ],
    [ "GetLabelYCoordinate", "class_r_n_a.html#affd3ef139bea53fbc39df41f68e1f030", null ],
    [ "GetMaximumPairingDistance", "class_r_n_a.html#a3bc6d5801335f85eed40a2daa987d96b", null ],
    [ "GetNucleotide", "class_r_n_a.html#a84842b95ea62a357b12c440ad8ff4912", null ],
    [ "GetNucleotideXCoordinate", "class_r_n_a.html#a97c3e9a51d32a73fadd53f467c8f3ae0", null ],
    [ "GetNucleotideYCoordinate", "class_r_n_a.html#acb2539f11b34a8e34668697ebf2890fb", null ],
    [ "GetNumberOfForcedDoubleStranded", "class_r_n_a.html#af9730b22a5500a3f23b4ee80382074e5", null ],
    [ "GetNumberOfForcedFMNCleavages", "class_r_n_a.html#a8a3843c206b1cf6790754454da102da4", null ],
    [ "GetNumberOfForcedModifications", "class_r_n_a.html#a50c7d53681d5618f3c04e2140f8bb0c5", null ],
    [ "GetNumberOfForcedPairs", "class_r_n_a.html#ae1c0ee1877897c83292d4194cc137206", null ],
    [ "GetNumberOfForcedProhibitedPairs", "class_r_n_a.html#a11cd24997b6494ed631121b84e3b9b9b", null ],
    [ "GetNumberOfForcedSingleStranded", "class_r_n_a.html#a505c57ee97ac3b5c1c21063087658ca3", null ],
    [ "GetPair", "class_r_n_a.html#a7dfa253c1491b51383acd12b73c72a2f", null ],
    [ "GetPairEnergy", "class_r_n_a.html#aa240d53bc9bc53897931a18b67bbcee0", null ],
    [ "GetPairProbabilities", "class_r_n_a.html#a07e1fb189a45eb5b4604c286d5dd9d14", null ],
    [ "GetPairProbability", "class_r_n_a.html#abd1da0a82663b38414a01c39b1a3973e", null ],
    [ "GetProgress", "class_r_n_a.html#a772f52c2865590b7a153ae3a6aab1de5", null ],
    [ "GetSequence", "class_r_n_a.html#ac3b16f4e3c72091bf69a55e923c51728", null ],
    [ "GetSequence", "class_r_n_a.html#a9f49a0851278aaa5aa39a1d538c58fa9", null ],
    [ "GetSequenceLength", "class_r_n_a.html#a4ca21eb3e90dc475cc32c616b614ebc2", null ],
    [ "GetStructure", "class_r_n_a.html#a7513721374fab949fd42bbe4980894dc", null ],
    [ "GetStructureNumber", "class_r_n_a.html#a27b3bdb17fb4233cc4f91753beda7570", null ],
    [ "GetVprimeQ", "class_r_n_a.html#a78bdc62dac46d0d817fed67f5843010c", null ],
    [ "GetW", "class_r_n_a.html#ad1d51357d72c2be6b5f62c31594d401b", null ],
    [ "init", "class_r_n_a.html#a4eb047c1e53a52c0ce515e0289e6e84f", null ],
    [ "MaximizeExpectedAccuracy", "class_r_n_a.html#a61141a694126843efe07081e5918fba7", null ],
    [ "PartitionFunction", "class_r_n_a.html#a654db191fe8a0a76350dfc57b2c5740c", null ],
    [ "PredictProbablePairs", "class_r_n_a.html#ad05388cc60648f09cc1acb3c4b513516", null ],
    [ "ProbKnot", "class_r_n_a.html#ab5dd63132dc8324c84c670cf887884c2", null ],
    [ "ProbKnotFromSample", "class_r_n_a.html#a2049ad01ea76e5072133e23dbd24d03d", null ],
    [ "ReadConstraints", "class_r_n_a.html#a256ed0d8b5a7fdd1dc1ea5ced058cc7a", null ],
    [ "ReadDMS", "class_r_n_a.html#a0a8bba2d4d6c3a9afd718a7bf420eb29", null ],
    [ "ReadDSO", "class_r_n_a.html#a05b4ec1bf9e25c5673c065baabab6233", null ],
    [ "ReadExperimentalPairBonus", "class_r_n_a.html#ad15624f880c955d1985914292b95d746", null ],
    [ "ReadSHAPE", "class_r_n_a.html#adb84ef498e9d26d3f7add0e47855621a", null ],
    [ "ReadSHAPE", "class_r_n_a.html#a54e154d693ade8fcfe62e47961d37701", null ],
    [ "ReadSSO", "class_r_n_a.html#a6ed8d145eb78bfcb22aa5f5e7e41f7c8", null ],
    [ "ReFoldSingleStrand", "class_r_n_a.html#ac068513a05333629af4fad23a5b3213d", null ],
    [ "RemoveBasePair", "class_r_n_a.html#a7aae4a7dcb9fcd87d3cf0c4c2393b9b3", null ],
    [ "RemoveConstraints", "class_r_n_a.html#a3b4a3b4f525013b59f48b63423108d3c", null ],
    [ "RemovePairs", "class_r_n_a.html#ab6f64d9425687dc03f7cedf417bc9bc3", null ],
    [ "ResetError", "class_r_n_a.html#a5e8cc3e54438c3a4ed2a042723386006", null ],
    [ "Rsample", "class_r_n_a.html#aac5de92b17d1fe4d2eb0cc3fbee595aa", null ],
    [ "SetConstraints", "class_r_n_a.html#ac7a793cd3862b976a5b354da43a60df2", null ],
    [ "SetErrorDetails", "class_r_n_a.html#ae45785f80ecd7b6b7783fb290dd78152", null ],
    [ "SetExtrinsic", "class_r_n_a.html#a127218155fa5e2d68aaf6729e97616e0", null ],
    [ "SetProgress", "class_r_n_a.html#a507cd74f3b8a98e2172ec7c85465d919", null ],
    [ "SetSequenceLabel", "class_r_n_a.html#aa746e33612c6cc7fcf8856fac3d364ac", null ],
    [ "SpecifyPair", "class_r_n_a.html#ac529346af902b21f9b3bb2b17a3ee661", null ],
    [ "Stochastic", "class_r_n_a.html#ab06ab0d0af7f74d3e3a20c8d52e65ef5", null ],
    [ "StopProgress", "class_r_n_a.html#ae59b36ca61c62813ad096eebb02f3850", null ],
    [ "WriteConstraints", "class_r_n_a.html#aa860f3f448840a8af8461212b1920ab6", null ],
    [ "WriteCt", "class_r_n_a.html#a6e1e0db7f8f0f3d9cb7dc14f5dc61953", null ],
    [ "WriteDotBracket", "class_r_n_a.html#a2c04e45d3cf6436afe8622d140f2f1d1", null ],
    [ "WriteThermodynamicDetails", "class_r_n_a.html#ab08f9c44b784e65ab966583e420fcba4", null ],
    [ "ct", "class_r_n_a.html#a408ad69397beb1ffd831191114fd7630", null ],
    [ "drawallocated", "class_r_n_a.html#ae25e6cb1b35e47ab74890167fdc2cac4", null ],
    [ "energyallocated", "class_r_n_a.html#a3c34e05e63dc1941784f1108b119019e", null ],
    [ "ErrorCode", "class_r_n_a.html#acf869e72c097bae7824a72e8771e7a5a", null ],
    [ "ev", "class_r_n_a.html#ace814d16ca5fedb855c9aa0f6f2bc9b4", null ],
    [ "ew", "class_r_n_a.html#ae265114cc811d410c0ea14a20a2fdb0b", null ],
    [ "ew2", "class_r_n_a.html#a0df9aab831d67cd88c2c0c95daef95bf", null ],
    [ "ew3", "class_r_n_a.html#a34ff98ed1d5627cfaed571447a4a71fb", null ],
    [ "ew5", "class_r_n_a.html#a43e0afefc5122174ea5f3065e58d0a29", null ],
    [ "ewmb", "class_r_n_a.html#a835a2d2ed7ac6e253920b916949bea46", null ],
    [ "ewmb2", "class_r_n_a.html#a8e958d96bdc5439caac1f1d7471ac0e9", null ],
    [ "fce", "class_r_n_a.html#a4d886f6e92f47962bf2c43f4d24b52bd", null ],
    [ "lastErrorDetails", "class_r_n_a.html#adb078ada0b1e8fc227b448e62f5634d3", null ],
    [ "lfce", "class_r_n_a.html#a96865031568d528c1e72ca7c77be6417", null ],
    [ "mod", "class_r_n_a.html#ad7a7258298a689bf42fc43a41a16effb", null ],
    [ "partitionfunctionallocated", "class_r_n_a.html#a58544d6b4e93569ef51898208be06d37", null ],
    [ "pfdata", "class_r_n_a.html#a3ee830c6817a9a5da8216589b64a7b4d", null ],
    [ "progress", "class_r_n_a.html#a16c4c8714246b97262acb50b4b2aad1d", null ],
    [ "Q", "class_r_n_a.html#a5701fc30b0ed83b60770f84f929e1909", null ],
    [ "structurecoordinates", "class_r_n_a.html#a7dbc86bea8ba359871e6b4ad44ccc0a5", null ],
    [ "v", "class_r_n_a.html#aec3ea67d1df58e7b3239f8bf03ed0c55", null ],
    [ "vmin", "class_r_n_a.html#acf9f5a2f7a2f2142b0efe2224419f553", null ],
    [ "w", "class_r_n_a.html#a7c17cadb7eddf9094421a1bd0c7d22cb", null ],
    [ "w3", "class_r_n_a.html#abab25d8889f843589176b4ca2498fd20", null ],
    [ "w5", "class_r_n_a.html#a11556061f3292c11b40708b7cefb0b35", null ],
    [ "wca", "class_r_n_a.html#a22519dbb4cb68fc353dfabc3a249d99c", null ],
    [ "wcoax", "class_r_n_a.html#a208752cb6f6c11e0be87b8ab22038d93", null ],
    [ "wl", "class_r_n_a.html#aa9df4fb4c33660eac913f67390c862e0", null ],
    [ "wlc", "class_r_n_a.html#ac72cbeed4c3618bf170c4afea4ce2d70", null ],
    [ "wmb", "class_r_n_a.html#a7fac02aee6bfebae87d44941693ec66d", null ],
    [ "wmbl", "class_r_n_a.html#a2c62121fec224f1c2f6705534a34f91c", null ]
];