| RNAstructure Classes Version 6.2

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- PairMultifindSeq1() : Multilign_object
- PairSeq1() : Multilign_object
- PartitionFunction() : RNA
- PartitionFunctionBimolecular() : HybridRNA
- PlaceSeqOnStack() : design
- predict_ncRNA_probabilities() : Multifind_object
- PredictProbablePairs() : RNA
- PrepInput() : Multilign_object
- PrepMultifindInput() : Multilign_object
- probability_of_all_hairpins() : ProbScan
- probability_of_all_helices() : ProbScan
- probability_of_all_internal_loops() : ProbScan
- probability_of_hairpin() : ProbScan
- probability_of_helix() : ProbScan
- probability_of_internal_loop() : ProbScan
- probability_of_multibranch_loop() : ProbScan
- probability_of_stack() : ProbScan
- probability_of_stemloop() : ProbScan
- ProbKnot() : RNA
- ProbKnotFromSample() : RNA
- ProbScan() : ProbScan
- ProgressiveMultilign() : Multilign_object